The Hammer and the Dance of Cell Cycle Control

نویسندگان

چکیده

Shutdown of cell cycle progression by checkpoint activation is the exception rather than norm when cells face physiological levels replication stress.In response to endogenous stress, use tunable deceleration and brake release mechanisms under control ATR CHK1 kinases for timely completion DNA duplication.Intrinsic activation, maintenance, recovery represent a continuum, which modulated phosphorylation ubiquitin-dependent proteasomal degradation.Sharp transitions, in one phase fully concluded before next begins, can be blurred due balancing act between genome integrity maintenance an urge completion.Deviations from ordered transitions promote cancer, with therapeutic opportunities kinase inhibitors. Cell checkpoints secure next. They are important signal stress lesions stop severe problems occur. Recent work suggests, however, that machinery responds more subtle sophisticated ways faced naturally occurring challenges, such as impediments associated stress. Instead following go approach, fine-tuned ataxia telangiectasia Rad3-related protein (ATR) 1 (CHK1) flexibly adapt their program changing conditions. We highlight emerging examples intrinsic regulation discuss clinical relevance. (see Glossary) ensure proper through [1.Hartwell L.H. Weinert T.A. Checkpoints: controls order events.Science. 1989; 246: 629-634Crossref PubMed Google Scholar]. Genome among key tasks control, damage have thus evolved trigger arrest genomic allow time repair [2.Zhou B.B. Elledge S.J. The response: putting perspective.Nature. 2000; 408: 433-439Crossref Scopus (2483) model, agreement general meaning term checkpoint, implies certain criteria, met continue its (the ‘go’ decision) which, if they not fulfilled, lead transient or permanent ‘stop’ decision). Among major G1/S G2/M spindle mitosis. By analogy ‘the hammer dance’ metaphor introduced early 2020 Tomas Pueyo emphasize importance acting quickly forcefully contain global health threat posed SARS-CoV-2 later ease measures continually manage COVID-19 (‘Coronavirus: dance’, published online March 19, 2020; https://medium.com/@tomaspueyo/coronavirus-the-hammer-and-the-dance-be9337092b56), we consider full halt hammer’, effective means minimize further threats integrity. However, relying exclusively on binary decisions, picture starting emerge uses brakes [3.Lemmens B. Lindqvist A. mitotic entry: model progression.J. Biol. 2019; 218: 3892-3902Crossref Scholar], thereby temporarily decelerating processes while continuing others, globally balance surveillance (‘the dance’). Thus, extreme measure seems reserved events threaten survival, moderate adaptable commonly used deal controllable intermediates flexible context-specific manner. In this review, aim provide synthesis recent findings shed new light functions during unperturbed proliferation presence mild forms exogenous particular focus signaling mammalian cells. sources (i.e., challenges normal and, exacerbated manner, cellular transformation cancer development). Rather providing elaborate characterization many specialized factors involved resolving these problems, been summarized comprehensively elsewhere [4.Cortez D. Replication-coupled repair.Mol. Cell. 74: 866-876Abstract Full Text PDF (40) Scholar, 5.Pasero P. Vindigni Nucleases at stalled forks: how reboot few shortcuts.Annu. Rev. Genet. 2017; 51: 477-499Crossref (51) 6.Berti M. et al.The plasticity forks clinically relevant genotoxic stress.Nat. Mol. 21: 633-651Crossref (14) itself buffered against enables S-phase same allowing resolve impediments. then introduce notion only type severity problem determine but also determined long persists. Along lines, elucidate low maintain beneficial integrity, persistent high adaptation unresolved potentially harmful lesions. Finally, put concept into context currently ongoing attempts target therapeutically. insights function (as it found cells) direct implications targeted small molecule inhibitors therapy. outlook paradigm may help better understand treat human disease. great survival homeostasis. To preserve coordinate progression, network intertwined pathways control. Due functions, deregulation contributes transformation, aging. When experience lesions, activate (DDR), critical sensing, signaling, repairing [7.Bartek J. Lukas checkpoints: initiation adaptation.Curr. Opin. 2007; 19: 238-245Crossref (557) Scholar,8.Ciccia making safe play knives.Mol. 2010; 40: 179-204Abstract (2400) DDR comprises large proteins, recognize different types efficient repair. As involve slow termination resume once repaired. 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Teixeira L.K. stress: oncogenes spotlight.Genet. 43e20190138Crossref alterations levels, sense ensuing change redox potential elevated reactive oxygen species (ROS) actively prevent excessive [12.Somyajit al.Redox-sensitive alteration replisome architecture safeguards integrity.Science. 358: 797-802Crossref (46) Besides availability, fidelity inherently linked sequence. Repetitive sequences, comprise portions genome, potent 1B). misalign typically compact difficult replicate chromatin. Repeat expansions cause several neurological muscular diseases, repetitive sequences AT-rich regions chromosomal fragile sites, breakpoints contribute rearrangements mutations [13.Kaushal S. Freudenreich C.H. role stalling structures chromosome fragility.Genes Chromosom. Cancer. 58: 270-283PubMed Scholar,14.Tubbs al.Dual roles poly(dA:dT) tracts collapse.Cell. 2018; 174 (e19): 1127-1142Abstract (59) Common sites (CFSs) transcribed domains density origins 1C), makes them particularly vulnerable breakage [15.Brison O. al.Transcription-mediated organization across genes sets common genome-wide.Nat. Commun. 10: 5693Crossref (12) Scholar,16.Debatisse Rosselli F. A journey sites: S telophase.Genes 305-316Crossref (0) inverted repeats prone adopt secondary hairpins, cruciforms, G-quadruplexes GC-rich areas 1D). These non-B stall forks, translocation [17.Bacolla al.Cancer mutational burden shaped G4 DNA, mitochondrial dysfunction.Prog. Biophys. 147: 47-61Crossref (8) Secondary regulatory transcription source Transcription–replication conflicts arise collisions machineries 1E), both head-on co-directional orientation. Such evoke formation co-transcriptional R-loops 1F), nascent RNAs hybridize back template generate RNA–DNA hybrid displacing non-template DNA. Although interfere (e.g., conditions oncogene-induced stress) [18.Niehrs C. Luke Regulatory facilitators gene expression stability.Nat. 167-178Crossref (2) 19.Crossley M.P. al.R-loops regulators threats.Mol. 73: 398-411Abstract (99) 20.García-Muse T. Aguilera R loops: pathological roles.Cell. 179: 604-618Abstract (53) particular, genome-destabilizing [21.Hamperl al.Transcription–replication conflict orientation modulates R-loop activates distinct responses.Cell. 170 774-786Abstract (157) Scholar,22.Lang K.S. al.Replication-transcription orchestrate bacterial pathogenesis.Cell. 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Sci. 42: 483-495Abstract (34) DPCs linking nucleic acid-modifying enzymes trapped reaction nonenzymatic crosslinking chromatin-associated replisome-associated metalloprotease SPRTN (DVC1) plays central DPC removal repair, premature aging phenotype early-onset hepatocellular carcinoma, known Ruijs-Aalfs SPARTAN syndrome 28.Vaz 29.Lessel al.Mutations onset progeroid features.Nat. 46: 1239-1244Crossref 30.Vaz al.Metalloprotease SPRTN/DVC1 orchestrates replication-coupled 64: 704-719Abstract (96) 31.Maskey R.S. al.Spartan deficiency phenotypes.Nat. 5: 5744Crossref (54) 32.Maskey topoisomerase cleavage complexes tumorigenesis.Nucleic Acids Res. 45: 4564-4576Crossref Importantly, all mentioned preceding text result topological constraints 1I), torsional supercoiling) reduce stability [33.Branzei Foiani Maintaining fork.Nat. 11: 208-219Crossref (556) 34.Bermejo R. al.Preventing stability: transcription.Mol. 2012; 710-718Abstract (117) 35.Lang Merrikh Topological responsible detrimental outcomes replication-transcription conflicts.bioRxiv. (Published July 2, 2019. https://doi.org/10.1101/691188)Google proposed that, analogous gating yeast coupling localizing units close nuclear pore complex) [36.Bermejo protects releasing pores.Cell. 2011; 146: 233-246Abstract (155) arises deregulated replisomes encounter unreleased transcripts localize periphery [37.Teloni al.Efficient pre-mRNA replication-stress-associated instability.Mol. 73 (e12): 670-683Abstract (18) This situation renders highly dependent condition relieved suppressed origin firing cyclin-dependent (CDK) inhibition Intriguingly, occurs oncogenic MYC enable transcription-coupled [38.Scholz B.A. al.WNT AHCTF1 super-enhancer-mediated gating.Nat. 1723-1731Crossref (4) It tempting speculate similar exhausted bodies could gating-associated enhance cancer. With sensitive tools investigate border normally has blur. For instance, intra-S-phase defined mechanism double-strand breaks (DSBs) [39.Bartek al.Checking phase.Nat. 2004; 792-804Crossref (553) now know undergo frequent reversal four-way junctions even [6.Berti regressed arms reversed resemble DSB ends, canonical [40.Schmid J.A. al.Histone ubiquitination required phase.Mol. 71 (e8): 897-910Abstract clean distinction damage-induced therefore always possible. Moreover, demonstrated interstrand (ICLs), directly majority affected ATR-dependent manner [41.Mutreja al.ATR-mediated slowing assist traverse cross-links.Cell Rep. 24 (e5): 2629-2642Abstract least impediments, local seem tightly connected signaling. apical together effector coordinates stabilization speed, firing. latter primarily achieved CHK1-mediated subsequent degradation CDC25A phosphatase, reduces CDK elevating inhibitory phosphorylations. Under acute ATR–CHK1 inhibits late origins, limiting number factories, dormant factories fire so nearby recovered [42.McIntosh Blow J.J. Dormant licensing replicative stresses.Cold Spring Harb. Perspect. 4a012955Crossref (77) Scholar,43.Ge X.Q. Chk1 factory allows existing factories.J. 191: 1285-1297Crossref (135) obstacles overcome remodeling, repriming, post-replicative Scholar,44.Wong R.P. al.Processing polymerase-blocking spatially temporally segregated forks.Mol. 77 3-16Abstract (15) re-initiation past fork-stalling mediated primase-polymerase PrimPol, duplication challenging space [45.Bai G. al.HLTF promotes reversal, preventing multiple unrestrained synthesis.Mol. 78 (e7): 1237-1251Abstract 46.Quinet al.PRIMPOL-mediated adaptive suppresses BRCA-deficient cells.Mol. (e9): 461-474Abstract (26) 47.Švikovi? al.R-loop restricted PrimPol-mediated repriming.EMBO 38e99793Crossref (28) Overall, hindrance outcome also, importantly, persist 2). Dynamic utilized transiently, remodel structure junction stabilizing buying structure. Persistently nucleolytic processing, switching, translesion part tolerance pathway. cases, lasting cannot bypassed collapse recombination-mediated restart [48.Sotiriou S.K. al.Mammalian RAD52 break-induced collapsed 1127-1134Abstract (124) phase, left stress-inducing decreases fewer options remain. buffering too easily [49.Toledo L. al.Replication catastrophe : fails because exhaustion.Mol. 66: 735-749Abstract RPA ssDNA leading lagging strand uncoupled [50.Ercilla al.Physiological replication.Cell 30 2416-2429Abstract Given excess licensed suppression within capacity. Early investigated mostly after induced kinases, absence [51.Petermann E. Caldecott K.W. Evidence ATR/Chk1 pathway maintains phase.Cell Cycle. 2006; 2203-2209Crossref 52.Moiseeva T.N. Bakkenist C.J. replication.DNA Repair (Amst). 81102655Crossref 53.Sørens

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ژورنال

عنوان ژورنال: Trends in Biochemical Sciences

سال: 2021

ISSN: ['1362-4326', '0167-7640', '0968-0004']

DOI: https://doi.org/10.1016/j.tibs.2020.11.002